Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7852
Gene Symbol: CXCR4
CXCR4
0.120 Biomarker disease BEFREE Therefore, efficient Cxcr4 desensitization is critical for lymphoid differentiation of HSPCs, and its impairment is a key mechanism underpinning the lymphopenia observed in mice and likely in WS patients. 28550161 2017
Entrez Id: 53637
Gene Symbol: S1PR5
S1PR5
0.010 Biomarker disease BEFREE There are promising data suggesting that it may also have a direct neuroprotective property independent of peripheral lymphocytopenia.<b>Areas covered</b>: We reviewed the pharmacology and the clinical and radiological effects of siponimod.<b>Expert opinion</b>: The selective effect of siponimod on the S1P1 and S1P5 receptors offers a favorable side-effect profile and transient bradycardia can be avoided by dose titration. 31603362 2019
Entrez Id: 1901
Gene Symbol: S1PR1
S1PR1
0.010 Biomarker disease BEFREE There are promising data suggesting that it may also have a direct neuroprotective property independent of peripheral lymphocytopenia.<b>Areas covered</b>: We reviewed the pharmacology and the clinical and radiological effects of siponimod.<b>Expert opinion</b>: The selective effect of siponimod on the S1P1 and S1P5 receptors offers a favorable side-effect profile and transient bradycardia can be avoided by dose titration. 31603362 2019
Entrez Id: 3561
Gene Symbol: IL2RG
IL2RG
0.030 AlteredExpression disease BEFREE The variant is downstream of the IL2RG gene with potential regulatory significance, suggesting a mechanism for the T-cell lymphopenia. 28770187 2017
Entrez Id: 6574
Gene Symbol: SLC20A1
SLC20A1
0.010 Biomarker disease BEFREE The severity of the anemia and block in terminal erythroid differentiation and B cell lymphopenia are striking and suggest that PiT1 serves a fundamental and nonredundant role in murine terminal erythroid differentiation and B cell development. 23376999 2013
Entrez Id: 5449
Gene Symbol: POU1F1
POU1F1
0.010 Biomarker disease BEFREE The severity of the anemia and block in terminal erythroid differentiation and B cell lymphopenia are striking and suggest that PiT1 serves a fundamental and nonredundant role in murine terminal erythroid differentiation and B cell development. 23376999 2013
Entrez Id: 931
Gene Symbol: MS4A1
MS4A1
0.110 Biomarker disease BEFREE The purpose of this review was to critically analyse the literature on invasive fungal infections (IFIs) occurring in association with mAbs and fusion proteins other than tumour necrosis alpha (TNF-α) inhibitors, including therapeutics modulating T-cell-mediated pathologies (muromonab, abatacept, belatacept, ipilimumab, basiliximab, daclizumab), inducing lymphopenia (alemtuzumab), depleting CD20+ B cells (rituximab) and interfering with various targets (anakinra, natalizumab, blodalumab, ixekizumab and others) with a focus on children, and to provide a framework of evaluating the risk for IFIs in this population. 28444889 2017
Entrez Id: 54474
Gene Symbol: KRT20
KRT20
0.010 Biomarker disease BEFREE The purpose of this review was to critically analyse the literature on invasive fungal infections (IFIs) occurring in association with mAbs and fusion proteins other than tumour necrosis alpha (TNF-α) inhibitors, including therapeutics modulating T-cell-mediated pathologies (muromonab, abatacept, belatacept, ipilimumab, basiliximab, daclizumab), inducing lymphopenia (alemtuzumab), depleting CD20+ B cells (rituximab) and interfering with various targets (anakinra, natalizumab, blodalumab, ixekizumab and others) with a focus on children, and to provide a framework of evaluating the risk for IFIs in this population. 28444889 2017
Entrez Id: 5229
Gene Symbol: PGGT1B
PGGT1B
0.010 Biomarker disease BEFREE The protein geranylgeranyltransferase Pggt1b is up-regulated in single-positive thymocytes, and loss of Pggt1b leads to marked defects in thymocyte egress and T cell lymphopenia in peripheral lymphoid organs in vivo. 31722972 2020
Entrez Id: 718
Gene Symbol: C3
C3
0.010 AlteredExpression disease BEFREE The presence of albuminuria, lymphopenia and low complement C3 levels were independent prognostic predictors of short-term mortality in SLE patients with PI. 30968568 2019
Entrez Id: 915
Gene Symbol: CD3D
CD3D
0.110 Biomarker disease BEFREE The phenotype is usually T-B+NK+ SCID with lymphopenia where the clinical findings may be mild (CD3γ) or severe (CD3δ, ε, ζ) owing to the underlying molecular defect. 23590417 2013
Entrez Id: 917
Gene Symbol: CD3G
CD3G
0.020 Biomarker disease BEFREE The phenotype is usually T-B+NK+ SCID with lymphopenia where the clinical findings may be mild (CD3γ) or severe (CD3δ, ε, ζ) owing to the underlying molecular defect. 23590417 2013
Entrez Id: 50943
Gene Symbol: FOXP3
FOXP3
0.030 Biomarker disease BEFREE The patient had severe naïve T lymphopenia and a major deficit of FOXP3(+)CD4(+) T cells, both in circulation and in the highly inflamed intestinal mucosa, but mutations in the FOXP3 locus were excluded. 17484867 2007
Entrez Id: 1956
Gene Symbol: EGFR
EGFR
0.010 Biomarker disease BEFREE The multivariate analysis showed that age, resection margins, human epidermal growth factor receptor, and lymphopenia were significant predictors of IBTR. 31366546 2019
Entrez Id: 8720
Gene Symbol: MBTPS1
MBTPS1
0.050 Biomarker disease BEFREE The multiple sclerosis drug Fingolimod (FTY720) is a potent S1P receptor agonist that causes peripheral lymphopenia. 31742704 2019
Entrez Id: 50943
Gene Symbol: FOXP3
FOXP3
0.030 AlteredExpression disease BEFREE The low number of Foxp3-expressing CD4+CD25high T cells in grafted patients is not a specific default of this compartment but a consequence of global CD4 T-cell lymphopenia after allogeneic stem cell transplantation. 16038781 2005
Entrez Id: 6962
Gene Symbol: TRBV20OR9-2
TRBV20OR9-2
0.060 Biomarker disease BEFREE The immunological phenotype consists of the oligoclonal expansion of TCR gammadelta T cells combined with TCR alphabeta T cell lymphopenia. 16276422 2005
Entrez Id: 6962
Gene Symbol: TRBV20OR9-2
TRBV20OR9-2
0.060 AlteredExpression disease BEFREE The effect of dual TCR expression on LIP was most pronounced in acute lymphopenia, which is driven by recognition of low-affinity self-pMHC ligands. 30168881 2018
Entrez Id: 3718
Gene Symbol: JAK3
JAK3
0.020 GeneticVariation disease BEFREE The discovery that Jak3 mutations are a significant cause of severe combined immunodeficiency (SCID), a rare inherited defect characterized by lymphopenia, has provided valuable insights into the functions of Jak3 in lymphoid development and function. 15220007 2004
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.010 Biomarker disease BEFREE The combination of PKD with grey hair and lymphocytopenia was also reminiscent of Bcl2-/- mouse phenotype. 28973148 2017
Entrez Id: 3558
Gene Symbol: IL2
IL2
0.040 Biomarker disease BEFREE The CKO mice had a spontaneous autoimmune phenotype that was due in part to early lymphopenia associated with a defect in the production of interleukin 2 (IL-2) as well as incomplete cell-cycle progression of their T cells. 22544392 2012
Entrez Id: 5880
Gene Symbol: RAC2
RAC2
0.120 GeneticVariation disease BEFREE The causes of the T-cell lymphopenia included DiGeorge syndrome (n = 2), idiopathic T-cell lymphopenia (n = 2), extravascular extravasation of lymphocytes (n = 3), and a Rac2 mutation (n = 1). 19996402 2009
Entrez Id: 3574
Gene Symbol: IL7
IL7
0.400 Biomarker disease BEFREE The aberrant T-cell expansions associated with the pathogenesis of CIN result in increased proliferation/apoptosis and possibly exhaustion of peripheral blood T cells which, in association with the inadequate compensatory thymic export of new TREC expressing T cells partially because of IL-7 deficiency, may contribute to lymphopenia in CIN. 22092365 2012
Entrez Id: 112935892
Gene Symbol: LINC02605
LINC02605
0.080 Biomarker disease BEFREE The aberrant T-cell expansions associated with the pathogenesis of CIN result in increased proliferation/apoptosis and possibly exhaustion of peripheral blood T cells which, in association with the inadequate compensatory thymic export of new TREC expressing T cells partially because of IL-7 deficiency, may contribute to lymphopenia in CIN. 22092365 2012
Entrez Id: 100
Gene Symbol: ADA
ADA
0.100 Biomarker disease BEFREE The adenosine-deaminase-deficient patients highlight a treatable cause of HIV-negative CD4+ lymphopenia in adults, perhaps accounting for further cases of 'non-HIV AIDS'. 9616253 1998